Chewy Whole Wheat Chocolate Chip Cookies

Chewy, buttery, and chocolaty Whole Wheat Chocolate Chip Cookies are a healthier cookie recipe the whole family will love! They're made in just a few simple steps, making this a great recipe for little ones to help make as well! Easily made dairy-free and so delicious!

This recipe was originally published January 26, 2021. It was updated with new photos and recipe information on September 13, 2023.


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There are some feelings that I haven't unlearned from childhood. A heart bursting with love when I see a litter of puppies; excitement about a freshly baked batch of chocolate chip cookies; fear of public speaking; dread at the thought of making my bed.

Some feelings, in the search for maturity and finally "feeling" like an "adult" I'm constantly working on overcoming. Others are ones I never care to let go of. Constantly seeking to make better and better chocolate chip cookie recipes is one of the latter.

And given that I have received some feedback about the consistency of my high-altitude chocolate chip recipes, I decided this search can help benefit you, too. After all, my high-altitude cookies are thicker and heartier. Delicious in their own right, but not the cookie for you if soft and chewy cookies are your jam.

With a buttery-rich batter, a thinner cookie, and just as much chocolate chip goodness, these whole wheat chocolate chip cookies are our new favorites. I've received unanimous praise from friends, running buddies, and my husband alike. Try a batch of these new favorite cookies today. You may just remember those warm childhood feelings, too.

A circular wire cooling rack with whole wheat chocolate chip cookies on it.

These Chocolate Chip Cookies Are...

  • Rich
  • Chewy
  • Buttery
  • Chocolaty

Bookmark or pin this page now because this chewy chocolate chip cookie recipe is one you will want to make on repeat!

All of the ingredients for whole wheat chocolate chip cookies.

Ingredients

  • Unsalted Butter: Softened to room temperature. If using salted butter, reduce the salt in the recipe by a pinch.
  • Light Brown Sugar: Measure the sugar by packing it tightly into the measuring cups. For a deeper molasses flavor, opt for dark brown sugar.
  • White Sugar: Sweetens the cookie deal!
  • White Whole Wheat Flour: A type of wheat that isn't as tough or nutty as traditional whole wheat flour. You can find it at Whole Foods and most major grocery store chains.
  • Egg: One large egg binds the cookies together and contributes a savory base for the cookies.
  • Vanilla Extract: For the best flavor, use pure vanilla extract.
  • Salt: Enhances the sweetness of the cookies.
  • Baking Soda: Helps the cookies rise, giving them a great texture.
  • Semisweet Chocolate Chips: Or, semi-sweet chocolate chunks.

How to Make Whole Wheat Chocolate Chip Cookies

Preheat the oven and line the baking sheets with parchment paper or silicone baking mats.

In a large mixing bowl, combine the butter and sugars. Mix or whisk until combined.

Add the egg and vanilla extract to the butter and sugar mixture. Mix or whisk until combined.

A bowl of brown sugar, sugar, and melted butter.
A bowl of melted butter and sugar mixture with an egg and vanilla extract.

Add the flour, baking soda, and salt to the mixing bowl. Combine well.

Fold the chocolate chips into the dough.

A bowl of cookie dough before adding the chocolate chips.
A mixing bowl with chocolate chip cookie dough.

Scoop the cookie batter out onto the prepared cookie sheets, 2 inches apart.

Bake the cookies for 10-12 minutes, or until they just start to turn golden around the edges. Enjoy!

A pan with scoops of chocolate chip cookie dough on it.
A shot of cookies on a white plate in front of a basket of cookies

Recipe Pro-Tips

  • Weighing the Flour: I recommend measuring the flour by weighing it. It is the most precise way to do so and kitchen scales only cost around $10 on Amazon. They'll make your cookies perfect every time. Alternatively, spooning and leveling the flour is the second-best measuring option.
  • Prepare the Baking Sheet with Parchment or a Silicone Mat - this will keep the cookies from sticking to the baking sheet and will help them bake more evenly and not burn.
  • Scoop the Cookies into Uniform Sizes: by using a cookie scoop or weighing the scoops with a food scale.
An up-close angled shot of chocolate chip cookie dough scoops packed on a baking sheet.

Dietary Adaptations

  • Dairy-Free: To make dairy-free whole wheat chocolate chip cookies, simply substitute vegan butter for unsalted and use vegan chocolate chips.
  • Gluten-Free: Make these chocolate chip cookies without gluten by substituting 1-for-1 gluten-free flour for whole wheat flour.

Variations

Part of the fun of chocolate chip cookies is all the variations, am I right? Here are some of my favorites. Substitute any of the following in or add an extra half cup of any to the existing chocolate chips!

  • Chopped walnuts
  • Raisins
  • M & M's
  • Butterscotch chips
  • White chocolate chips
  • Dried cranberries
  • Chocolate chunks
  • Mini chocolate chips
  • Dark chocolate chips
An up-close shot of cookies on a small stack of small white plates.

High Altitude Directions

This is a fantastic high-altitude chocolate chip cookie recipe. just follow the recipe directions as listed, increasing the temperature from 350 to 365 degrees Fahrenheit for the perfect thick and chewy chocolate chip cookies above 3,500 feet!

Storage Directions

  • Storage: Leftover wheat cookies keep covered in an airtight container at room temperature for 2-3 days. For a shelf-life of up to 6 days, store the airtight container in the refrigerator.
  • Freezing: The cookies can also be frozen in a freezer-safe container for up to 3 months. Defrost the cookies at room temperature for 30 minutes to 1 hour, or until thawed through.
An up-close shot of a chocolate chip cookie with a bite taken out of it.

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An up-close shot of whole wheat chocolate chip cookies.
4.80 from 5 votes

Chewy Whole Wheat Chocolate Chip Cookies

Chelsea Plummer | Mae's Menu

Chewy and buttery Whole Wheat Chocolate Chip Cookies the whole family will love!

These cookies are another great high altitude chocolate chip cookie recipe, too. Follow the directions as listed, preheating the oven to and baking the cookies at 365 degrees Fahrenheit instead of 350.
Prep Time 10 minutes
Cook Time 10 minutes
Total Time 20 minutes
Course Baked Goods
Cuisine American
Servings 2 ½ dozen cookies
Calories 156 kcal

Ingredients
  

  • 1 cup unsalted butter melted and cooled for 3-5 minutes
  • 1 cup packed light brown sugar
  • ½ cup granulated white sugar
  • 1 large egg
  • 2 teaspoons pure vanilla extract
  • 2 ¾ cups 360g whole wheat flour
  • ½ teaspoon salt
  • ½ teaspoon baking soda
  • 2 cups semisweet chocolate chips or chunks

Instructions
 

  • Preheat the oven to 350 degrees Fahrenheit (365 degrees Fahrenheit if baking above 3500 feet of elevation) and line two large baking sheets with parchment paper or silicone baking mats.
  • In a large mixing bowl or bowl of a stand mixer, combine the butter, brown sugar, and granulated sugar. Mix on medium speed (or whisk by hand) for 20-30 seconds, or until combined.
  • Add the egg and vanilla to the butter mixture and mix or whisk for another 20-30 seconds, until combined and smooth.
  • Add the flour, salt, and baking soda to the flour mixture and gently whisk or mix in on slow speed, until a smooth but thick cookie dough forms. Note: the dough will look a little wet and that's ok.
  • Add the chocolate chips to the cookie dough and fold in with a spatula until combined.
  • Scoop the cookie dough by 2 tablespoon balls onto the lined cookie sheet, leaving 2 inches between the cookies.
  • Bake the cookies for 10-12 minutes, or until they are golden around the edges. Cool the cookies on a wire rack and serve when cooled to your degree of liking!

Notes

1. Cookies can be stored in an airtight container at room temperature or in the refrigerator for 4-5 days. They can be frozen in a freezer-safe container for up to 2 months.
2. You can melt the butter using the following techniques:
- On the stovetop - add cubed butter to a small saucepan and heat over low heat, stirring every 20-30 seconds or so, or until the butter is melted
- In the microwave - add cubed butter to a microwave-safe bowl. Cover the bowl with a paper towel or microwave-safe lid. Heat on 20-30% power for 30-40 second intervals, or until melted.
3. For the best results, use fresh flour (i.e. with a good expiration date) and weigh it to measure it.
4. You can also mix in ½ cup walnuts, raisins, M&M's, dried cranberries, white chocolate chips, and more into these cookies!

Nutrition

Serving: 1cookieCalories: 156kcalCarbohydrates: 21gProtein: 2gFat: 8gSaturated Fat: 5gPolyunsaturated Fat: 3gCholesterol: 19mgSodium: 52mgFiber: 2gSugar: 13g
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4.80 from 5 votes (4 ratings without comment)

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Recipe Rating




3 Comments

  1. These are delicious! Added walnuts, put them in the refrigerator for a few hours before forming. Made them a bit smaller and baked at 350 for 9 minutes, at 6000 feet elevation. They freeze well.
    Next batch, and there will definitely be a next batch, with mini chocolate chips...

    1. Hi, there! So glad to hear that you liked the cookies! Such a great idea to add walnuts. 🙂 Thanks for the feedback! If you have a moment, do you mind rating the recipe by clicking the five stars on the recipe card? It really helps me out.
      Thank you so much!
      Chelsea

  2. 5 stars
    I’ve been baking chocolate chip cookies for decades. Lately, I’ve been looking for a chewy recipe that uses whole wheat flour and requires no chilling. After experimenting with several recipes, this is it! Thank you May’s Menu! Your recipe checked all the boxes. I followed the recipe, only deviating slightly by substituting dark chocolate chips and pecans. Yummy! This is my new go to recipe. So glad you popped up in my recipe search!